Lyme Disease Treatment in Humans

Lyme Disease Treatment in Humans

In this blog, we will look at treating Lyme Disease. You will learn:

  • What the standard treatment for Lyme Disease is and how successful it typically is
  • What are the possible approaches that we can use to treat symptoms of Lyme Disease
  • How Functional Medicine can help to successfully treat Lyme Disease

Do you suffer from Lyme Disease and do you know how to treat it? Has your treatment for Lyme Disease been successful?  If you are struggling with these issues, then this blog is for you. Please read on for the details! 

** Please note: If you want the longer, more detailed version of this article, then please click here **

What is Lyme Disease?

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Lyme Disease is a bacterial infection, caused by Borrelia burgdorferi. Borrelia is carried by infected black-legged ticks and most commonly spread by a tick bite. We have written extensively about Lyme Disease in our blog. Start here with our blog on ‘What is Lyme Disease’?

Lyme is a complex disease with both acute and potentially chronic symptoms. It typically, but not always, starts with a rash, headache, fever and chills. It can further develop into more serious symptoms such as possible arthritis, neurological or cardiac issues.

Unfortunately, Lyme Disease is not completely understood in the medical world. It is often missed or mis-diagnosed. When left untreated in its acute early phase, it can become chronic. Sometimes, treatment fails and it can still become chronic Lyme. Sometimes, a person goes undiagnosed for Lyme because they didn’t notice the tick bite and never went to the doctor. In all of these scenarios, a person can develop chronic long-term symptoms that will likely very much affect their quality of life.

Lyme Disease Treatment in Humans

Conventional Lyme Disease treatment in humans relies on antibiotics. Doctors usually prescribe a course of antibiotics for 2 to 4 weeks (Feng J, 2020). Typically, three antibiotics are used to treat Lyme; doxycycline, cefuroxime and amoxicillin.

Two treatment guidelines exist, from the Infectious Diseases Society of America (IDSA) and the International Lyme and Associated Diseases Society (ILADS) (Rogerson AG, 2020). Recommendations differ between the two guidelines and there isn’t much research supporting either set of guidelines for successful treatment (Rogerson AG, 2020).

** Basically, there isn’t really a consensus in the medical community on how to treat Lyme Disease. **

Usually, early antibiotic treatment shortly after infection effective against symptoms. But antibiotics are not effective in removing Borrelia burgdorferi completely from the body. There is a high treatment failure rate of 10–35% of patients (Rogerson AG, 2020). This is in patients who got an early diagnosis and went straight into antibiotics treatment. This does not include the people who were undiagnosed, misdiagnosed or simply didn’t even know they were bitten by a tick.

If the initial antibiotics treatment does not work, research shows that giving more antibiotics for a longer period of time is not effective (Rogerson AG, 2020).

If Lyme is not treated early or goes untreated, symptoms can get worse and can affect quality of life (Rogerson AG, 2020).

How does Functional Medicine Treat Lyme Disease?

** Recent research shows that 63% of patients experience persistent symptoms, even after antibiotic treatment for Lyme Disease (Feng J, 2020). **

This figure of 63% includes all patients with Lyme, caught at whichever stage, who took antibiotics as a treatment. Some of these people may have taken the antibiotics early on and some may have only tried antibiotics at a later stage in their disease process.

Given the poor treatment success rate for antibiotics, we need a new approach to treating Lyme Disease. Many factors come into play with Lyme Disease treatment in humans (different strategies are used for animals):

  • A single tick can carry multiple pathogens. It can have many microorganisms, such as bacteria, parasites and viruses (Moutailler S, 2016). 50% of all ticks carry at least one pathogen, indicating that a large number of ticks are infected (Moutailler S, 2016).
  • Lyme, or the Borrelia bacterium, increases inflammation, downregulates immunity and evades the immune system. It can cause an overactive or autoimmune immune response.
  • Lyme bacteria can form biofilms. This means that it hides in cells, burrows into tissue and remains hidden. Once safely inside a biofilm, it stays hidden from antibiotics or other medications.
  • The Borrelia bacteria develop persister cells in response to antibiotics. Persister bacteria remain dormant in the body and can survive high dose antibiotics. Once the antibiotics course is finished, persisters start to grow again like normal cells (Rudenko N, 2019). Through persister cells, Lyme can become very difficult to detect (CDC, 2022) and (Columbia University, 2021).

With Lyme treatment, we need to address bacterial infection, inflammation, the strength of the immune system and detoxification ability. It is critical to also look into gut health. Remember that 70- 80% of our immune system is based in the gut and requires a well-functioning healthy gut. We may need to look for other root causes, such a HPA axis health, toxic exposure to mold or metals or other root causes.

If you have been struggling with Lyme for some time, it is crucial to find an expert in Functional Medicine who is also Lyme-literate. A Lyme-literate doctor is one who has experience and expertise in treating Lyme. We offer that in our Medicine with Heart clinic, where we have vast experience in working with very complex conditions.

Lyme Disease Treatment in our Clinic

There are multiple modalities to employ in a complex case of Lyme. We assess each person on an individual case-by-case basis. Then we use some or all of the following techniques in a protocol designed to treat the Lyme Disease:

DIET - A first key step is to adopt an Anti-Inflammatory diet to fight the inflammation. What we eat can either reduce or increase inflammation and can affect the immune system response. In the case of Lyme, and every other illness, we want to have an anti-inflammatory diet that reduces inflammation and supports good health. This is true for optimal health as well.

We also need a nutrient dense diet to give the body the nutrients it needs to heal and to boost the immune system. It’s also important to have a diet that incorporates good gut health and promotes a healthy microbiome.

Gluten-free, dairy-free, sugar-free, organic, non-GMO whole foods is where we start. We recommend going all organic, especially for animal products. Eat lots of veggies and whole foods. We favor a Paleo-style or gluten-free Mediterranean diet.

And don’t forget to get sufficient hydration and drink clean, filtered water.

ANTIMICROBIAL HERBS – We typically use herbs which are antimicrobial, antibacterial or antiviral, meaning they can kill microbes, bacteria and viruses.  Herbal medicine has a long history dating back almost 5,000 years (Feng J, 2020). Over centuries, herbal medicines have been shown to be safe in Ayurvedic Medicine and Traditional Chinese Medicine. Recent reviews in Europe and South America show that severe adverse events from herbs are extremely rare (Feng J, 2020).

Seven herbs have specifically been found to be highly active against Borrelia burgdorferi and more effective against Lyme bacteria than antibiotics in some cases (Feng J, 2020). They also have strong activity against the dormant persister bacteria, which are not killed by the current antibiotics used to treat Lyme (Feng J, 2020).

These seven herbs are (Feng J, 2020):

  • Ghanaian quinine
  • Black walnut
  • Japanese knotweed
  • Sweet wormwood
  • Cat’s claw
  • Mediterranean rockrose (or Cistus incanus)
  • Chinese skullcap

We might also use herbs to combat any Lyme co-infections found to be present. Babesia is a Lyme co-infection. Certain herbal medicines have good inhibitory activity against Babesia (Zhang Y, 2021):

  • Ghanaian quinine
  • Sweet wormwood
  • Chinese skullcap
  • Christmas bush
  • Japanese knotweed

Essential Oils - One study looked at essential oils. It found that 10 essential oils have strong activity against Borrelia and against the persister forms of Lyme Disease (Feng J, 2018). These essential oils are based on garlic, myrrh, thyme, cinnamon, allspice, cumin and eucalyptus (Feng J, 2018). These essential oils were better at killing persister forms of Lyme bacteria than standard antibiotics (Feng J, 2018).

BIOFILM DISRUPTORS - As mentioned, Lyme bacteria can form biofilms. Biofilms are a protective defense mechanism the bacteria uses when under stress. They burrow into tissue and hide there. Then antimicrobial medication or herbs cannot reach the bacteria once they are hidden in biofilms.

Biofilms are a big cause of persisting chronic Lyme Disease. So, getting to the root cause and destroying all of the biofilm involved is key to a successful Lyme treatment protocol. There are various substances that can break down biofilms, allowing the herbs or medication get to the pathogen(s) we are trying to treat for.

Possible biofilm disruptors to use in treatment include:

  • The antimicrobial peptide LL37. LL37 can reduce cell attachment to surfaces and decrease the overall thickness of established biofilms by up to 40% (Verderosa AD, 2019). We have previously written about LL37 here and about peptide therapy here.
  • Stevia can help to eliminate Borrelia spirochetes and persisters. When tested against attached biofilms, Stevia significantly reduced the biofilm and is effective against Borrelia (Theophilus PAS, 2015).
  • The herbs Otoba Bark extract and Cat's Claw treat Lyme bacteria and can reduce biofilms (Datar A, 2010). There is anecdotal evidence that these two herbs used in combination can be as effective as antibiotics (Datar A, 2010).
  • Antibiotics can also decrease biofilm size.

Finally, we also look to support IMMUNE HEALTH and GUT HEALTH when treating Lyme Disease. These are important to boost immunity, reduce inflammation and maintain a healthy gut microbiome.


  • For optimal health, and especially with disease treatment, it is important to get stress under control. We can never get rid of all stress, but we can manage it through mediation, qi gong, tai chi, breath work or whatever stress management technique works best for you.
  • It is important to have good sleep hygiene to sleep well so the body can repair.
  • If you smoke and/or drink alcohol, this is a good time to quit (or at least reduce) to help your immune system.
  • Exercise & movement can help to treat Lyme (D’Adamo CR, 2015) and (Maksimyan S, 2021).
  • We also look at and reduce toxin exposure, including mold, metals, chemicals from processed foods, etc.

What are Other Novel Approaches to Lyme Disease Treatment in Humans?

Innovative new techniques may be helpful in treating Lyme. One is phage therapy, which uses viruses to treat bacterial infections. Each specific phage or virus attacks a specific bacterium and is harmless to humans (Lin DM, 2017). Phage viruses selectively target and kill bacteria and are common in nature.

Phage therapy has been used for 100 years (Lin DM, 2017). It is not widely used nor well-known, primarily because not much research has been done with phage therapy on humans. But it is a potential alternative to antibiotics. And may be part of the solution for increasingly antibiotic-resistant bacteria.

Induced Native Phage Therapy or INPT is a type of phage therapy. It eliminates infections more quickly and efficiently than conventional treatment does. It is thought to have no side effects or risk to humans (Jernigan DA, 2021). INPT can be considered a boost to the immune system to fight infections.

Based on early research, INPT looks to be a safe, effective and innovative way to treatment Borrelia infection. INPT can be used alone or in conjunction with other modalities for LD treatment.

In Conclusion

Lyme is sometimes a diagnosis of exclusion where we rule out other diseases. In our clinic, we conduct a detailed analysis and search for the root causes of the symptoms. Then Functional Medicine principles can be applied to address the root cause issues to improve symptoms, especially if no treatable diagnosis has been found.

In our clinic, we have expertise in treating a range of complicated, difficult-to-diagnose conditions like acute and chronic Lyme Disease. We regularly treat and resolve Lyme, chronic infections and other complex conditions in patients in our Functional Medicine clinic.

** Please stay tuned for our next Blog!  **

As always, please get in touch with us. If you or someone you know is struggling with chronic or post-treatment Lyme, contact our clinic today. We can work on any issue(s) and improve your health. Book a free health evaluation call with us today, to see how we can help you with your concerns. We can answer your questions and help you book an initial consult with one of the functional medicine doctors in our clinic.

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Dr. Miles Nichols and Dr. Diane Mueller have spoken for the following organizations:

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